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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9915769_9917080_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9915769 - 9917080
Intron Length:
1312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTGCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTATATATAACC
Flanking Amino Acid:
PLCCALFPQKSSMSVTRLEP
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.9
91.1
28.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
83.3
0.75
0.8
83.8
31.2
Minor 5ss
40.6
-1.1
3.1
59.8
44.7
Minor BPS
59.1
0.26
1.8
73.47
36.8

Associated Gene:

Gene:
SFXN1
Ensembl Gene ID:
ENSAPLG00000009192
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009618
9891782 - 9917475
25694