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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9918464_9918739_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9918464 - 9918739
Intron Length:
276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTACA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTCCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TTAAAGCTAACT
Flanking Amino Acid:
VDRKLEDGQKNVRLLRSELQ
Intron Amino Acid Position:
686

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.6
29.6
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
81.6
0.71
0.7
77.5
24.5
Minor 5ss
36.1
-1.6
2.6
44
43
Minor BPS
45.3
-0.2
2.4
71.85
44.1

Associated Gene:

Gene:
KIF20A
Ensembl Gene ID:
ENSAPLG00000009529
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009966
9917530 - 9930738
13209