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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9918832_9919225_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9918832 - 9919225
Intron Length:
394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTGG
5'SS Class:
major
3'SS Sequence:
TCTGTATTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
TCTTCTGTATTC
Flanking Amino Acid:
CQMELNTATAELRKYQKLLE
Intron Amino Acid Position:
655

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
63.7
43.1
Major BPS
75.5
0.63
1
66
40.9
Major PPT
73.6
0.53
0.9
66
39.9
Minor 5ss
35.5
-1.6
3.3
46.8
48.5
Minor BPS
48.7
-0.1
2.2
65.17
41.7

Associated Gene:

Gene:
KIF20A
Ensembl Gene ID:
ENSAPLG00000009529
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009966
9917530 - 9930738
13209