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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9925900_9925981_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9925900 - 9925981
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGCCTC
5'SS Class:
major
3'SS Sequence:
TCTCTCCCCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TCTCTCCCCATA
Flanking Amino Acid:
IAALRQNQQSKLKQIVVPFR
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
66
40.1
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
74.4
0.55
0.7
69.2
24.8
Minor 5ss
38.7
-1.3
3.2
51.2
39.7
Minor BPS
40.7
-0.7
2.1
53.03
39.6

Associated Gene:

Gene:
KIF20A
Ensembl Gene ID:
ENSAPLG00000009529
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009966
9917530 - 9930738
13209