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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9926126_9926702_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9926126 - 9926702
Intron Length:
577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTGAGTTTC
5'SS Class:
major
3'SS Sequence:
GTGTTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATACCAT
U12 Branch Point Sequence:
GTGATACCATCT
Flanking Amino Acid:
GGSEIVPKISELSLCDLAGS
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
72
34.3
Major BPS
56.8
0.17
1.3
66.9
39.3
Major PPT
83.5
0.75
0.8
81.3
36.4
Minor 5ss
40.6
-1.1
2.9
49.1
41.3
Minor BPS
36
-0.9
2
51.65
42.1

Associated Gene:

Gene:
KIF20A
Ensembl Gene ID:
ENSAPLG00000009529
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009966
9917530 - 9930738
13209