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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9928638_9929070_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9928638 - 9929070
Intron Length:
433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTAAC
5'SS Class:
major
3'SS Sequence:
TGTTCTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CATTTTTCATGT
Flanking Amino Acid:
QAAHRFSFTQIFGPDVGQKL
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
75.1
35.1
Major BPS
100
1.24
0.5
100
0
Major PPT
83.3
0.75
0.9
80.8
36.8
Minor 5ss
36.3
-1.5
3
45
37.2
Minor BPS
44.1
-0.3
2
60.16
43.9

Associated Gene:

Gene:
KIF20A
Ensembl Gene ID:
ENSAPLG00000009529
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009966
9917530 - 9930738
13209