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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9929411_9929843_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9929411 - 9929843
Intron Length:
433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCCG
5'SS Class:
strong_major
3'SS Sequence:
GCTGATTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
GCGTGCTTAATC
Flanking Amino Acid:
ISPNLEGSQQAATEDVNGKL
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
63.1
43
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
76
0.59
1
68.8
41.6
Minor 5ss
25.6
-2.8
3
30.2
43
Minor BPS
58
0.23
1.8
62.46
43.6

Associated Gene:

Gene:
KIF20A
Ensembl Gene ID:
ENSAPLG00000009529
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009966
9917530 - 9930738
13209