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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9930451_9930695_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9930451 - 9930695
Intron Length:
245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTGCG
5'SS Class:
major
3'SS Sequence:
TGTGTCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCGGAG
U12 Branch Point Sequence:
GGGTGCGGAGCT
Flanking Amino Acid:
RAGKMAAGTGKHKLLGAGPT
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1
59.9
39.3
Major BPS
41
-0.5
1.7
36.8
44.4
Major PPT
73
0.52
0.9
66.4
35.7
Minor 5ss
29.8
-2.3
3.1
38.2
40.5
Minor BPS
37.6
-0.8
2.4
54.34
46.7

Associated Gene:

Gene:
BRD8
Ensembl Gene ID:
ENSAPLG00000009994
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022342
9930363 - 9945049
14687
ENSAPLT00000033715
9930363 - 9950466
20104
ENSAPLT00000010483
9930363 - 9955976
25614
ENSAPLT00000029163
9929759 - 9946558
16800
ENSAPLT00000048057
9930363 - 9946558
16196
ENSAPLT00000026056
9929759 - 9955976
26218
ENSAPLT00000043015
9929759 - 9945283
15525
ENSAPLT00000025524
9929759 - 9955976
26218
ENSAPLT00000036943
9929759 - 9955976
26218