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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9931447_9932483_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9931447 - 9932483
Intron Length:
1037

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TATCCTCTGACT
Flanking Amino Acid:
GRPPDWFSQKHCASQYSELL
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.2
26.3
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
82
0.72
0.7
81.3
30.7
Minor 5ss
38.2
-1.3
3.1
49.9
46.6
Minor BPS
59.7
0.39
1.7
78.65
37.1

Associated Gene:

Gene:
BRD8
Ensembl Gene ID:
ENSAPLG00000009994
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026056
9929759 - 9955976
26218
ENSAPLT00000043015
9929759 - 9945283
15525
ENSAPLT00000025524
9929759 - 9955976
26218
ENSAPLT00000036943
9929759 - 9955976
26218
ENSAPLT00000022342
9930363 - 9945049
14687
ENSAPLT00000033715
9930363 - 9950466
20104
ENSAPLT00000010483
9930363 - 9955976
25614
ENSAPLT00000029163
9929759 - 9946558
16800
ENSAPLT00000048057
9930363 - 9946558
16196