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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9935385_9936633_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9935385 - 9936633
Intron Length:
1249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGGAGC
5'SS Class:
major
3'SS Sequence:
CTTCCCTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTGTAT
U12 Branch Point Sequence:
TCTCCAGGAACT
Flanking Amino Acid:
GSLLPTSPRLVGENEMAVAS
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
62.2
42.2
Major BPS
62.7
0.32
1.4
63.4
44
Major PPT
76
0.58
0.9
72.5
32.1
Minor 5ss
38.8
-1.3
3.1
48.4
42.9
Minor BPS
46.4
-0.2
2.3
71.74
44.5

Associated Gene:

Gene:
BRD8
Ensembl Gene ID:
ENSAPLG00000009994
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010483
9930363 - 9955976
25614
ENSAPLT00000033715
9930363 - 9950466
20104
ENSAPLT00000029163
9929759 - 9946558
16800
ENSAPLT00000048057
9930363 - 9946558
16196
ENSAPLT00000025524
9929759 - 9955976
26218
ENSAPLT00000043015
9929759 - 9945283
15525
ENSAPLT00000022342
9930363 - 9945049
14687
ENSAPLT00000036943
9929759 - 9955976
26218