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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9936779_9937972_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9936779 - 9937972
Intron Length:
1194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTCCC
5'SS Class:
strong_major
3'SS Sequence:
TACTCTCTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TTCCCTTCTACT
Flanking Amino Acid:
GAVPASPAASGAPTLSRLLE
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1.1
69.7
41.3
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
69.7
0.44
0.9
69.9
36.2
Minor 5ss
41
-1
2.8
54.5
42.6
Minor BPS
51.6
0.13
1.9
73.84
42.9

Associated Gene:

Gene:
BRD8
Ensembl Gene ID:
ENSAPLG00000009994
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026056
9929759 - 9955976
26218
ENSAPLT00000043015
9929759 - 9945283
15525
ENSAPLT00000022342
9930363 - 9945049
14687
ENSAPLT00000036943
9929759 - 9955976
26218
ENSAPLT00000010483
9930363 - 9955976
25614
ENSAPLT00000033715
9930363 - 9950466
20104
ENSAPLT00000029163
9929759 - 9946558
16800
ENSAPLT00000048057
9930363 - 9946558
16196