About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9938183_9938596_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9938183 - 9938596
Intron Length:
414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGTTCC
5'SS Class:
strong_major
3'SS Sequence:
CATCCTTGCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
ATTTGCTTATGA
Flanking Amino Acid:
PAAAPESVATVSQPEACVSM
Intron Amino Acid Position:
428

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
72.1
34.1
Major BPS
84.6
0.86
1
74
41.2
Major PPT
69.6
0.44
0.9
64.6
36
Minor 5ss
34.9
-1.7
3
44.7
43.3
Minor BPS
49.7
-0
2.3
69.36
43.2

Associated Gene:

Gene:
BRD8
Ensembl Gene ID:
ENSAPLG00000009994
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029163
9929759 - 9946558
16800
ENSAPLT00000048057
9930363 - 9946558
16196
ENSAPLT00000026056
9929759 - 9955976
26218
ENSAPLT00000043015
9929759 - 9945283
15525
ENSAPLT00000022342
9930363 - 9945049
14687
ENSAPLT00000036943
9929759 - 9955976
26218
ENSAPLT00000010483
9930363 - 9955976
25614
ENSAPLT00000033715
9930363 - 9950466
20104