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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9940533_9940897_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9940533 - 9940897
Intron Length:
365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTCAT
U12 Branch Point Sequence:
GACTCATGAACT
Flanking Amino Acid:
ARALFRSQMKDGQGEEDDED
Intron Amino Acid Position:
721

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
74.6
41.7
Major BPS
69.4
0.48
1.2
71.6
36.4
Major PPT
85.3
0.79
0.8
83.6
31.4
Minor 5ss
37.9
-1.4
3
50.1
46.1
Minor BPS
57.1
0.3
1.8
72.68
43.2

Associated Gene:

Gene:
BRD8
Ensembl Gene ID:
ENSAPLG00000009994
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026056
9929759 - 9955976
26218
ENSAPLT00000043015
9929759 - 9945283
15525
ENSAPLT00000025524
9929759 - 9955976
26218
ENSAPLT00000036943
9929759 - 9955976
26218
ENSAPLT00000022342
9930363 - 9945049
14687
ENSAPLT00000033715
9930363 - 9950466
20104
ENSAPLT00000010483
9930363 - 9955976
25614
ENSAPLT00000029163
9929759 - 9946558
16800
ENSAPLT00000048057
9930363 - 9946558
16196