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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9941113_9941427_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9941113 - 9941427
Intron Length:
315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
GATGTCTTACTT
Flanking Amino Acid:
SIPSSPASSQFSVCSEDQEA
Intron Amino Acid Position:
792

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
76.1
32.8
Major BPS
84.6
0.86
1
74
41.2
Major PPT
95.5
1.02
0.5
95.9
14.1
Minor 5ss
37.4
-1.4
2.9
51.7
39.2
Minor BPS
53.9
0.2
1.7
69
42.4

Associated Gene:

Gene:
BRD8
Ensembl Gene ID:
ENSAPLG00000009994
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025524
9929759 - 9955976
26218
ENSAPLT00000036943
9929759 - 9955976
26218
ENSAPLT00000022342
9930363 - 9945049
14687
ENSAPLT00000033715
9930363 - 9950466
20104
ENSAPLT00000010483
9930363 - 9955976
25614
ENSAPLT00000029163
9929759 - 9946558
16800
ENSAPLT00000048057
9930363 - 9946558
16196
ENSAPLT00000026056
9929759 - 9955976
26218
ENSAPLT00000043015
9929759 - 9945283
15525