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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9943436_9944300_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9943436 - 9944300
Intron Length:
865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAATG
5'SS Class:
strong_major
3'SS Sequence:
GGCCTTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
GGCCTTTTAACA
Flanking Amino Acid:
STRKQDASEKDSVPMGSPAF
Intron Amino Acid Position:
941

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.8
80.6
33.8
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
70
0.45
1
64.8
40.2
Minor 5ss
31.6
-2.1
3
39.4
46.1
Minor BPS
60.1
0.31
1.3
61.72
38.3

Associated Gene:

Gene:
BRD8
Ensembl Gene ID:
ENSAPLG00000009994
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029163
9929759 - 9946558
16800
ENSAPLT00000026056
9929759 - 9955976
26218
ENSAPLT00000043015
9929759 - 9945283
15525
ENSAPLT00000025524
9929759 - 9955976
26218
ENSAPLT00000036943
9929759 - 9955976
26218
ENSAPLT00000010483
9930363 - 9955976
25614
ENSAPLT00000033715
9930363 - 9950466
20104