Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9944346_9945498_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

9944346 - 9945498

Intron Length:

1153

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTT|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

GCCTTGTGACTAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

TTTCTGTTAATG

Flanking Amino Acid:

GSPAFLLSLFDGGTRGRRCA

Intron Amino Acid Position:

956

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

85.6

30.4

Major BPS

84.4

0.85

34.5

Major PPT

57.1

0.16

50.5

42.8

Minor 5ss

44.2

-0.6

2.9

66.4

38.5

Minor BPS

56.5

0.07

2.1

68.07

40.1

Associated Gene:

Gene:

BRD8

Ensembl Gene ID:

ENSAPLG00000009994

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029163

9929759 - 9946558

16800