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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9944346_9949870_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9944346 - 9949870
Intron Length:
5525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGAGAT
U12 Branch Point Sequence:
TACAAAGAGATT
Flanking Amino Acid:
GSPAFLLSLFMGHSWLWCRS
Intron Amino Acid Position:
956

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
85.6
30.4
Major BPS
49
-0
1.1
44.5
38.7
Major PPT
86
0.81
0.8
80.6
37
Minor 5ss
44.2
-0.6
2.9
66.4
38.5
Minor BPS
32.2
-1.3
2.2
46.3
39.4

Associated Gene:

Gene:
BRD8
Ensembl Gene ID:
ENSAPLG00000009994
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026056
9929759 - 9955976
26218
ENSAPLT00000025524
9929759 - 9955976
26218
ENSAPLT00000010483
9930363 - 9955976
25614
ENSAPLT00000036943
9929759 - 9955976
26218
ENSAPLT00000033715
9930363 - 9950466
20104