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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9950759_9952071_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9950759 - 9952071
Intron Length:
1313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGGAG
5'SS Class:
major
3'SS Sequence:
CTCTGCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAG
U12 Branch Point Sequence:
TTAGCCATATCT
Flanking Amino Acid:
DKEEHLLGKEAKTQEVPGDQ
Intron Amino Acid Position:
1119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1
63.9
42.4
Major BPS
63.7
0.34
1.5
63.4
44
Major PPT
80.1
0.68
0.8
76.8
32
Minor 5ss
27.2
-2.6
3.7
36.3
48.1
Minor BPS
54.4
0.22
2
77.93
44

Associated Gene:

Gene:
BRD8
Ensembl Gene ID:
ENSAPLG00000009994
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010483
9930363 - 9955976
25614
ENSAPLT00000036943
9929759 - 9955976
26218
ENSAPLT00000026056
9929759 - 9955976
26218
ENSAPLT00000025524
9929759 - 9955976
26218