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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9953004_9953430_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9953004 - 9953430
Intron Length:
427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTGGAA
U12 Branch Point Sequence:
AGACAGAGATCT
Flanking Amino Acid:
LSIWKMIASHRYSGPFLKAV
Intron Amino Acid Position:
1223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
67.3
44.3
Major BPS
49.9
-0
1.4
52.7
43.2
Major PPT
79.2
0.66
0.8
73.7
31.3
Minor 5ss
31
-2.2
3.3
40.6
45.6
Minor BPS
31.1
-1.3
2.1
45.18
38.3

Associated Gene:

Gene:
BRD8
Ensembl Gene ID:
ENSAPLG00000009994
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036943
9929759 - 9955976
26218
ENSAPLT00000026056
9929759 - 9955976
26218
ENSAPLT00000025524
9929759 - 9955976
26218
ENSAPLT00000010483
9930363 - 9955976
25614