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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9953500_9954484_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9953500 - 9954484
Intron Length:
985

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
GTGTCCTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TTCCGTTTAATT
Flanking Amino Acid:
QAPGYRDVVKRPMDLTSIKR
Intron Amino Acid Position:
1246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.7
83.9
30.3
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
79.4
0.66
0.9
72.5
37.7
Minor 5ss
38.4
-1.3
2.9
48.7
47.5
Minor BPS
60.4
0.4
1.8
76.64
40.8

Associated Gene:

Gene:
BRD8
Ensembl Gene ID:
ENSAPLG00000009994
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036943
9929759 - 9955976
26218
ENSAPLT00000026056
9929759 - 9955976
26218
ENSAPLT00000025524
9929759 - 9955976
26218
ENSAPLT00000010483
9930363 - 9955976
25614