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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9954716_9955730_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9954716 - 9955730
Intron Length:
1015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGACGGGG
5'SS Class:
major
3'SS Sequence:
GCCTCTCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
GCGCCCTGACGT
Flanking Amino Acid:
CSEDRLRLGRSGQAEADPPR
Intron Amino Acid Position:
1323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.2
54.8
44.4
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
78.8
0.65
0.8
72.4
32.3
Minor 5ss
28.7
-2.4
3.5
37.8
47.1
Minor BPS
43.2
-0.4
2
54.77
46.5

Associated Gene:

Gene:
BRD8
Ensembl Gene ID:
ENSAPLG00000009994
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036943
9929759 - 9955976
26218
ENSAPLT00000026056
9929759 - 9955976
26218
ENSAPLT00000025524
9929759 - 9955976
26218
ENSAPLT00000010483
9930363 - 9955976
25614