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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9984955_9985137_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9984955 - 9985137
Intron Length:
183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTCC
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTGCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAC
U12 Branch Point Sequence:
CGGCGTTTAACA
Flanking Amino Acid:
RLGLEELQKPELGCWARVQS
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
72.6
33
Major BPS
71.9
0.54
1.2
75.6
36.6
Major PPT
76.2
0.59
0.9
72.7
37.5
Minor 5ss
32.6
-2
3.2
41.8
45.1
Minor BPS
49.6
-0
1.8
56.94
42.7

Associated Gene:

Gene:
SLC34A1
Ensembl Gene ID:
ENSAPLG00000011205
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011694
9984756 - 9988140
3385