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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9985484_9985586_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9985484 - 9985586
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGC|GTGAGTGCG
5'SS Class:
major
3'SS Sequence:
TCTCTGTCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGGGAC
U12 Branch Point Sequence:
TGTCTCTGTCCC
Flanking Amino Acid:
SIIVSMVSSGLLEVRSAIPI
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.3
0.32
1.3
56.7
42.7
Major BPS
43.7
-0.3
1.4
38.2
41.7
Major PPT
77
0.61
0.8
68.8
37.2
Minor 5ss
28.5
-2.5
3
28.1
36.2
Minor BPS
36
-1.1
3.5
57.36
40.9

Associated Gene:

Gene:
SLC34A1
Ensembl Gene ID:
ENSAPLG00000011205
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011694
9984756 - 9988140
3385