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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9985699_9985788_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9985699 - 9985788
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCGCT
5'SS Class:
major
3'SS Sequence:
CTCCTCCACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCCAC
U12 Branch Point Sequence:
GGCTCCTCCACG
Flanking Amino Acid:
MQAGDRSEFKRAFAGATVHD
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
66.2
39.6
Major BPS
48.9
-0
1.3
58.1
40.4
Major PPT
70.6
0.46
0.8
65.4
29.3
Minor 5ss
34
-1.8
3.4
48.7
47
Minor BPS
47.8
-0.3
2.1
53.22
47

Associated Gene:

Gene:
SLC34A1
Ensembl Gene ID:
ENSAPLG00000011205
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011694
9984756 - 9988140
3385