Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9986782_9987131_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

9986782 - 9987131

Intron Length:

350

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGTGGG

5'SS Class:

strong_major

3'SS Sequence:

CGTGCCGTGGCAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AGCTGAT

U12 Branch Point Sequence:

GTTCCCCTCTCT

Flanking Amino Acid:

AKAIQKVINTDLPHPFSWLT

Intron Amino Acid Position:

360

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

0.9

64.9

41.1

Major BPS

67.4

0.43

1.1

57.1

41.8

Major PPT

59.5

0.22

1.1

53.6

41.5

Minor 5ss

26.8

-2.7

28.2

38.6

Minor BPS

38.1

-0.8

3.6

71.25

Associated Gene:

Gene:

SLC34A1

Ensembl Gene ID:

ENSAPLG00000011205

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011694

9984756 - 9988140

3385