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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9987508_9987585_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9987508 - 9987585
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGCA
5'SS Class:
major
3'SS Sequence:
GCCGTCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTAACAA
U12 Branch Point Sequence:
CCCGGGCTAACA
Flanking Amino Acid:
PGDKLASSFQIALCHFFFNI
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
66.9
38.7
Major BPS
49.8
-0
1.1
59
36.1
Major PPT
65.2
0.34
0.9
57.7
33.3
Minor 5ss
28.4
-2.5
3.6
38.8
46.4
Minor BPS
35.9
-1
2.5
42.55
45.5

Associated Gene:

Gene:
SLC34A1
Ensembl Gene ID:
ENSAPLG00000011205
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011694
9984756 - 9988140
3385