Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9999725_10004653_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

9999725 - 10004653

Intron Length:

4929

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CCA|GCGAGATCT

5'SS Class:

weak_major

3'SS Sequence:

GCGTGGTCCAAAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CGCCAAC

U12 Branch Point Sequence:

CGCCCGCCAACG

Flanking Amino Acid:

RVMEEGIHMATCPRLQHAAP

Intron Amino Acid Position:

495

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

54.9

0.12

1.4

57.6

41.4

Major BPS

43.8

-0.3

1.2

45.8

35.5

Major PPT

49.9

-0

1.1

47.4

39.7

Minor 5ss

-2.6

45.4

43.3

Minor BPS

36.6

-1.1

2.3

38.5

Associated Gene:

Gene:

HK3

Ensembl Gene ID:

ENSAPLG00000023983

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017334

9999399 - 10011597

12199