About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10010449_10017914_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10010449 - 10017914
Intron Length:
7466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TTTATCTGATTT
Flanking Amino Acid:
AHRPQREHMSRALADVMRPQ
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
87.2
0.84
0.8
84.6
36
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
55.3
0.24
1.7
77.21
39.5

Associated Gene:

Gene:
SHISA9
Ensembl Gene ID:
ENSAPLG00000004023
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004119
10009925 - 10018056
8132