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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1004095_1004463_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1004095 - 1004463
Intron Length:
369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATGAAAT
Flanking Amino Acid:
ASENSSNDNKLMFSDRL*
Intron Amino Acid Position:
785

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
80.9
31.3
Major BPS
100
1.24
0.5
100
0
Major PPT
89.5
0.89
0.7
87.9
29.5
Minor 5ss
37.8
-1.4
3.3
55.2
42.1
Minor BPS
65.5
0.57
1.8
88.14
35.9

Associated Gene:

Gene:
SLC5A11
Ensembl Gene ID:
ENSAPLG00000009559
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029262
1003934 - 1015514
11581