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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1006058_1006786_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1006058 - 1006786
Intron Length:
729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAACT
5'SS Class:
major
3'SS Sequence:
CCTCATTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAT
U12 Branch Point Sequence:
TATCCCTCATTT
Flanking Amino Acid:
GCFWKRANEKGAFWGLVIGL
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.1
78.1
36.3
Major BPS
70
0.5
1.1
71.2
35.2
Major PPT
72.3
0.5
0.8
64.7
36.1
Minor 5ss
41.7
-0.9
2.9
59.3
44.8
Minor BPS
55.5
0.25
1.8
75.35
41.2

Associated Gene:

Gene:
SLC5A11
Ensembl Gene ID:
ENSAPLG00000009559
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029262
1003934 - 1015514
11581
ENSAPLT00000028523
1003142 - 1015514
12373
ENSAPLT00000028248
1002142 - 1014286
12145
ENSAPLT00000009962
1003142 - 1014286
11145