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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1007599_1007986_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1007599 - 1007986
Intron Length:
388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGGTTAT
U12 Branch Point Sequence:
TATTTGGGAGTC
Flanking Amino Acid:
PKLVIELLPVGLRGLMMSVM
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
78.2
31.2
Major BPS
57.4
0.18
1.3
49.2
46
Major PPT
84.5
0.78
0.8
76.2
37.8
Minor 5ss
27.1
-2.6
3
33
42.4
Minor BPS
36.4
-1
2.5
51.55
40

Associated Gene:

Gene:
SLC5A11
Ensembl Gene ID:
ENSAPLG00000009559
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029262
1003934 - 1015514
11581
ENSAPLT00000028523
1003142 - 1015514
12373
ENSAPLT00000028248
1002142 - 1014286
12145
ENSAPLT00000009962
1003142 - 1014286
11145