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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1008993_1009394_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1008993 - 1009394
Intron Length:
402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTGTT
5'SS Class:
major
3'SS Sequence:
TGACCTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAC
U12 Branch Point Sequence:
TTCTTGTGACCT
Flanking Amino Acid:
LIGAVTLMVFSFVEVGGLGG
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
75.4
34.4
Major BPS
71.3
0.53
1.2
63.1
44.5
Major PPT
68.8
0.42
1
65.8
40.7
Minor 5ss
35.4
-1.7
3.5
54.7
43.6
Minor BPS
46.5
-0.1
2.3
71.74
45.4

Associated Gene:

Gene:
SLC5A11
Ensembl Gene ID:
ENSAPLG00000009559
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029262
1003934 - 1015514
11581
ENSAPLT00000028523
1003142 - 1015514
12373
ENSAPLT00000028248
1002142 - 1014286
12145
ENSAPLT00000009962
1003142 - 1014286
11145