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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1009476_1010301_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1009476 - 1010301
Intron Length:
826

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGGC
5'SS Class:
major
3'SS Sequence:
TCTCTTCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAC
U12 Branch Point Sequence:
CGTTTCCCACCG
Flanking Amino Acid:
LAITAVYTVAGGLAAVIYTD
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
65.7
40
Major BPS
62.4
0.31
1.2
72.4
34.6
Major PPT
83.7
0.76
0.7
76.5
32.2
Minor 5ss
28.5
-2.5
3.6
41.2
45.5
Minor BPS
42
-0.7
2.1
48.49
44.9

Associated Gene:

Gene:
SLC5A11
Ensembl Gene ID:
ENSAPLG00000009559
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029262
1003934 - 1015514
11581
ENSAPLT00000028523
1003142 - 1015514
12373
ENSAPLT00000028248
1002142 - 1014286
12145
ENSAPLT00000009962
1003142 - 1014286
11145