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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1010408_1011728_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1010408 - 1011728
Intron Length:
1321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTGAC
U12 Branch Point Sequence:
GCTGCAGTGACC
Flanking Amino Acid:
LFIYIFTKISVDMYAGALFI
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
1
73.1
43.9
Major BPS
51.2
0.03
1.2
44.4
38.7
Major PPT
76.5
0.6
0.8
69.5
36.8
Minor 5ss
35.6
-1.6
2.7
43.3
43.7
Minor BPS
43.6
-0.5
2.3
55.33
43.2

Associated Gene:

Gene:
SLC5A11
Ensembl Gene ID:
ENSAPLG00000009559
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029262
1003934 - 1015514
11581
ENSAPLT00000028523
1003142 - 1015514
12373
ENSAPLT00000028248
1002142 - 1014286
12145
ENSAPLT00000009962
1003142 - 1014286
11145