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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1012595_1013293_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1012595 - 1013293
Intron Length:
699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
CCTCTCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
CGCGCCTGACCT
Flanking Amino Acid:
LAGGQMVWWPVGASLFASNV
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
68.2
36.6
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
76.9
0.6
0.7
68.7
31.7
Minor 5ss
34.5
-1.8
2.8
48.2
40.4
Minor BPS
47.1
-0.1
1.9
60.99
48.3

Associated Gene:

Gene:
SLC5A11
Ensembl Gene ID:
ENSAPLG00000009559
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029262
1003934 - 1015514
11581
ENSAPLT00000028523
1003142 - 1015514
12373
ENSAPLT00000028248
1002142 - 1014286
12145
ENSAPLT00000009962
1003142 - 1014286
11145