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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1013366_1014110_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1013366 - 1014110
Intron Length:
745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCAGA
5'SS Class:
major
3'SS Sequence:
TCTGCTTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
GAATGCTGATGC
Flanking Amino Acid:
FVFVLAVGLWSMWKTQRSTV
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
68.9
43.8
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
80.1
0.68
0.8
72.3
37.7
Minor 5ss
38.3
-1.3
2.8
40.4
45.5
Minor BPS
39.5
-0.8
2.2
46.21
42

Associated Gene:

Gene:
SLC5A11
Ensembl Gene ID:
ENSAPLG00000009559
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028523
1003142 - 1015514
12373
ENSAPLT00000028248
1002142 - 1014286
12145
ENSAPLT00000009962
1003142 - 1014286
11145
ENSAPLT00000029262
1003934 - 1015514
11581