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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_101697_102106_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
101697 - 102106
Intron Length:
410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTCTGTTC
5'SS Class:
weak_major
3'SS Sequence:
TATATATCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TGTATCTGAAAC
Flanking Amino Acid:
CQCCILMPGQCHDCFSTVWN
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.1
0.22
1.3
59
40.7
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
69.3
0.43
1
63.6
41.6
Minor 5ss
36.6
-1.5
3.4
51.1
45.5
Minor BPS
55.3
0.14
1.6
66.3
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029301
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020476
101439 - 106123
4685