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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_102191_102277_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102191 - 102277
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TTGTTTTTAATA
Flanking Amino Acid:
EGQILHNTSQVDVEDPDLNK
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
84.2
33.9
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
79.6
0.67
0.9
77.6
35.5
Minor 5ss
36.8
-1.5
2.9
51.6
44.9
Minor BPS
75.5
0.8
1.1
78.11
33

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029301
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020476
101439 - 106123
4685