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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10359871_10408660_R

Intron Information:

Intron Rank:
148941
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
10359871 - 10408660
Intron Length:
48790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TCATTGGAACCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTCTTGTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
0.9
76.8
33.7
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
59
0.2
1.1
51.6
46
Minor 5ss
32.2
-2
3
41.4
39.1
Minor BPS
48.6
-0
2.4
74.4
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027583
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020670
10359379 - 10409628
50250