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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1041929_1045026_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1041929 - 1045026
Intron Length:
3098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTACGTTTC
5'SS Class:
major
3'SS Sequence:
TCCTGTCTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CAATCCTCACCC
Flanking Amino Acid:
GKDRSFSRHFRIFIPKKHRQ
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
73.7
38.2
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
71.5
0.48
1
64.8
41.3
Minor 5ss
44.2
-0.6
3.1
61.7
43.2
Minor BPS
50.8
0
1.9
60.81
44

Associated Gene:

Gene:
GRID2IP
Ensembl Gene ID:
ENSAPLG00000009359
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009747
1020571 - 1045061
24491