About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_104331_104936_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
104331 - 104936
Intron Length:
606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACTG
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATAAGAA
U12 Branch Point Sequence:
TTTTCTTCCACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.8
42.1
Major BPS
49.7
-0
1
47.1
36.1
Major PPT
76.4
0.59
0.8
72.6
30.7
Minor 5ss
34.9
-1.7
3.3
47.4
48
Minor BPS
61.4
0.34
2
78.34
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029301
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020476
101439 - 106123
4685