About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10441950_10446140_R

Intron Information:

Intron Rank:
152252
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
10441950 - 10446140
Intron Length:
4191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGGCATTGGTCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TCTTCTTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
89.6
24.2
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
58.7
0.2
1.2
57.7
47.1
Minor 5ss
57.8
0.27
2.3
75.5
40.6
Minor BPS
64.3
0.53
1.7
80.63
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029485
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027786
10441084 - 10446367
5284