Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10478178_10480984_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10478178 - 10480984

Intron Length:

2807

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTCCT

5'SS Class:

strong_major

3'SS Sequence:

TCTCTGTTGGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGATAAC

U12 Branch Point Sequence:

GGTGTGATAACA

Flanking Amino Acid:

TLKGFFNRITTSLTPPPMKV

Intron Amino Acid Position:

131

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.1

0.83

0.9

78.2

36.3

Major BPS

62.7

0.32

1.2

39.8

Major PPT

75.4

0.57

72.2

37.8

Minor 5ss

38.6

-1.3

52.1

38.3

Minor BPS

43.9

-0.4

2.3

57.26

41.9

Associated Gene:

Gene:

IL20RB

Ensembl Gene ID:

ENSAPLG00000003244

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038262

10473108 - 10483349

10242

ENSAPLT00000003297

10473108 - 10483728

10621