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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10499393_10535763_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10499393 - 10535763
Intron Length:
36371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTGTACTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTGTACTTTACA
Flanking Amino Acid:
YSCEENINASGVLWLSVVSE
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
83.2
28.5
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
82.9
0.74
0.9
76.6
37.3
Minor 5ss
36.4
-1.5
3.3
45.9
43.7
Minor BPS
64
0.43
1.9
76.53
40.2

Associated Gene:

Gene:
GSG1L
Ensembl Gene ID:
ENSAPLG00000003334
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037355
10499092 - 10562221
63130