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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10519787_10535763_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10519787 - 10535763
Intron Length:
15977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTACTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTGTACTTTACA
Flanking Amino Acid:
FIDLAPASEKGVLWLSVVSE
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
76.9
33.7
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
82.9
0.74
0.9
76.6
37.3
Minor 5ss
31.3
-2.1
3
38.6
46.4
Minor BPS
64
0.43
1.9
76.53
40.2

Associated Gene:

Gene:
GSG1L
Ensembl Gene ID:
ENSAPLG00000003334
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003391
10499092 - 10562221
63130