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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10582351_10584837_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10582351 - 10584837
Intron Length:
2487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTACATTTT
5'SS Class:
major
3'SS Sequence:
TTCTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
TGTAAATGAATT
Flanking Amino Acid:
MWLAPVLPGLVNRVYVIFDV
Intron Amino Acid Position:
1440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
74.1
37.1
Major BPS
73
0.57
1
73.6
28.6
Major PPT
91.7
0.94
0.6
87.8
22.3
Minor 5ss
44.6
-0.6
3.2
63.7
43
Minor BPS
47.6
-0.1
1.9
69.38
40.7

Associated Gene:

Gene:
KIAA0556
Ensembl Gene ID:
ENSAPLG00000003455
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041615
10576047 - 10645149
69103
ENSAPLT00000039077
10575143 - 10645149
70007
ENSAPLT00000003548
10576981 - 10652516
75536
ENSAPLT00000003542
10578730 - 10645149
66420