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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10584978_10587699_R

Intron Information:

Intron Rank:
20
Intron Class:
minor-like
Intron Phase:
1
Intron Coordinates:
10584978 - 10587699
Intron Length:
2722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
CTTTTTCTTCCAG|A
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
GTTATTTAAACT
Flanking Amino Acid:
HGDQILLTENNIAAFPDSVN
Intron Amino Acid Position:
1393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.2
0.03
1.2
56.4
43.4
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
91.8
0.94
0.6
84.6
30.3
Minor 5ss
97.5
1.6
0.6
95.7
13.5
Minor BPS
59
0.36
1.7
76.69
40.1

Associated Gene:

Gene:
KIAA0556
Ensembl Gene ID:
ENSAPLG00000003455
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041615
10576047 - 10645149
69103
ENSAPLT00000039077
10575143 - 10645149
70007
ENSAPLT00000003548
10576981 - 10652516
75536
ENSAPLT00000003542
10578730 - 10645149
66420