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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10587811_10589600_R

Intron Information:

Intron Rank:
19
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
10587811 - 10589600
Intron Length:
1790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTATCCTTC
5'SS Class:
strong_minor
3'SS Sequence:
CTTTGCTTTTCAG|T
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
CCTTAAT
U12 Branch Point Sequence:
TTTTCCTTAATA
Flanking Amino Acid:
DYEAPLMPCGFVFQFQLLTT
Intron Amino Acid Position:
1356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.8
-0
1.2
51.5
40.4
Major BPS
74.6
0.61
1.1
75.5
35.1
Major PPT
87.1
0.84
0.7
84.4
30.5
Minor 5ss
94
1.48
0.8
90.4
20.7
Minor BPS
93.3
1.36
0.6
95.44
19.5

Associated Gene:

Gene:
KIAA0556
Ensembl Gene ID:
ENSAPLG00000003455
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039077
10575143 - 10645149
70007
ENSAPLT00000003548
10576981 - 10652516
75536
ENSAPLT00000003542
10578730 - 10645149
66420
ENSAPLT00000041615
10576047 - 10645149
69103