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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10597017_10598641_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10597017 - 10598641
Intron Length:
1625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
TATTTTTATATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATATTTTTATAT
Flanking Amino Acid:
PKEPGIFTGKCLQLNFTMNW
Intron Amino Acid Position:
1168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
74.4
36.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.1
0.7
0.9
77.5
35.6
Minor 5ss
44.8
-0.6
2.8
60.6
43.7
Minor BPS
54.9
0.23
1.6
71.96
38.9

Associated Gene:

Gene:
KIAA0556
Ensembl Gene ID:
ENSAPLG00000003455
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041615
10576047 - 10645149
69103
ENSAPLT00000039077
10575143 - 10645149
70007
ENSAPLT00000003548
10576981 - 10652516
75536
ENSAPLT00000003542
10578730 - 10645149
66420