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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_10604977_10611964_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10604977 - 10611964
Intron Length:
6988

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATCT
5'SS Class:
strong_major
3'SS Sequence:
ATGTTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AATACATTAAAT
Flanking Amino Acid:
NIKEDDSAPKDEDFSIKDIA
Intron Amino Acid Position:
828

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.2
27.2
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
81.3
0.7
0.9
78.3
39.6
Minor 5ss
40.6
-1.1
3.1
57.4
46.8
Minor BPS
59
0.36
1.7
75.82
39.5

Associated Gene:

Gene:
KIAA0556
Ensembl Gene ID:
ENSAPLG00000003455
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003542
10578730 - 10645149
66420
ENSAPLT00000041615
10576047 - 10645149
69103
ENSAPLT00000039077
10575143 - 10645149
70007
ENSAPLT00000003548
10576981 - 10652516
75536